Hej Laurent! Thanks, that's perfect. I was exactly missing the "data_store"; https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/data_store/pRnaSeqTutorial/data that is.
Hope all is well in the UK! Cheers, Nico --------------------------------------------------------------- Nicolas Delhomme Genome Biology Computational Support European Molecular Biology Laboratory Tel: +49 6221 387 8310 Email: nicolas.delho...@embl.de Meyerhofstrasse 1 - Postfach 10.2209 69102 Heidelberg, Germany --------------------------------------------------------------- On 5 Sep 2013, at 22:02, Laurent Gatto wrote: > Dear Nico, > > On 5 September 2013 20:39, Nicolas Delhomme <delho...@embl.de> wrote: > > Hej Bioc! > > > > I'd like to update the data in that data package: > > > > https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/RnaSeqTutorial/ > > > > but as the data is not stored in SVN, I'm not sure how I'm supposed to do > > it. > > The Experiment Data Packages section in > http://master.bioconductor.org/developers/source-control/ describes how to > obtain the package. > > Different parts of the package reside on different urls. For example, for my > pRolocdata data package > > $ svn info > Path: . > Working Copy Root Path: /home/lgatto/dev/01_svn/datapkgs/pRolocdata > URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/pRolocdata > [...] > $ svn info data > Path: data > Working Copy Root Path: /home/lgatto/dev/01_svn/datapkgs/pRolocdata/data > URL: > https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/data_store/pRolocdata/data > [...] > $ svn info inst/extdata > Path: inst/extdata > Working Copy Root Path: > /home/lgatto/dev/01_svn/datapkgs/pRolocdata/inst/extdata > URL: > https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/data_store/pRolocdata/inst/extdata > [...] > > In you case > - https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/pRnaSeqTutorial > - > https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/data_store/pRnaSeqTutorial/data > > When you commit, make sure to commit form the respective directories; do not > add data and inst/extdata to > https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/pRnaSeqTutorial, > as svn status could indicate: > > $svn status > ? data > ? inst/extdata > > Hope this helps. > > Laurent > > > Thanks, > > > > Nico > > > > --------------------------------------------------------------- > > Nicolas Delhomme > > > > Genome Biology Computational Support > > > > European Molecular Biology Laboratory > > > > Tel: +49 6221 387 8310 > > Email: nicolas.delho...@embl.de > > Meyerhofstrasse 1 - Postfach 10.2209 > > 69102 Heidelberg, Germany > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
