Hi,
The definition is:
setGeneric("normalize",
function(object, ...) standardGeneric("normalize")
)
There seemed to be a pre-existing consensus that the name of the first
arg of this function should be 'object' so I kept it.
This is in BiocGenerics 0.7.1.
We strongly recommend that packages that define their own normalize()
(as a generic or an ordinary function) be modified to "use" this new
generic instead, that is, that they import it and define methods for
it. Those packages are: affy, codelink, deepSNV, diffGeneAnalysis,
EBImage, flowCore, isobar, MSnbase, oligo, and xps.
Please let us know if you have questions or concerns about this.
Thanks,
H.
--
Hervé Pagès
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024
E-mail: hpa...@fhcrc.org
Phone: (206) 667-5791
Fax: (206) 667-1319
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