On 4 March 2013 09:57, Antti Honkela <antti.honk...@hiit.fi> wrote: > According to the build logs my package (tigre) appears to have the same > problem, but I cannot reproduce this on my own install of R-devel (r62117). > > Perhaps this is just an R bug that has since been fixed?
I believe the warnings result from changes to R r62077 prefer loaded namepaces in find.package deprecate .find.package and .path.package Biobase and affy (which our packages rely on) use .find.package. $ grep .find.package Biobase/R/* Biobase/R/packages.R: pkgpath <- .find.package(package) Biobase/R/vignettes.R: vigrds = file.path(.find.package(pkgs), "Meta", "vignette.rds") Biobase/R/vignettes.R: vigs = file.path(.find.package(pkgName), "doc", vigMtrx[, "PDF"]) $ grep .find.package affy/R/* affy/R/getCDFenv.R: if (length(.find.package(cdfname, lib.loc=lib, quiet=TRUE)) == 0) I suspect that's were the warnings come from and were the fix should be applied. Hope this helps. Best wishes, Laurent > Antti > > > > On 04/03/13 10:52, Andreas Heider wrote: >> >> Dear mailing list, >> how can I solve the warning during the CHECK of the examples in my >> virtualArray package that states: >> >> Warning: ‘.find.package’ is deprecated. >> >>> From what function call does it originate? >> >> >> Thanks, >> Andreas >> >> [[alternative HTML version deleted]] >> >> >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > > > -- > Antti Honkela > antti.honk...@hiit.fi - http://www.hiit.fi/u/ahonkela/ > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
