chen li wrote:
Hi all,
It is off-topic but I just wonder if any one knows a
website or books talking about reading/processing DNA
sequences with C language.
In short, no. You have not provided much information, i.e. what kind of
sequences or the nature of the processing, but ABI.pm is available on
CPAN. I have been writing a suite in SAS (sorry perl-people), to
compare a series of *.ab1 files to a reference sequence to look for
genetic variables. That is simply accomplished in perl. Visually
discrepancies is beyond me.
Given the imminence of megabase and whole genome resequencing (3 billion
data points per subject X 3 bits minimum), you can bet that such a suite
will be the standard; noone is going to expect a technician to review
the data.
Kind regards,
Kevin
--
Kevin Viel
Department of Genetics [EMAIL PROTECTED]
Southwest Foundation for Biomedical Research phone: (210)258-9884
P.O. Box 760549 fax: (210)258-9444
San Antonio, TX 78245-0549
Kevin Viel
PhD Candidate
Department of Epidemiology
Rollins School of Public Health
Emory University
Atlanta, GA 30322
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