Maybe the protocol is SFTP and the transmission is secure...
*transmission* maybe not source code, which is the OP's issue...
By the way, isn't there a perl module that can crypt a string using a password (which can be used to decrypt it back)?
Yes but then you have to store the cypher or key and you have the same problem as the password.
Prompt for it so you don't store it anywhere or use 600 user:user permissions.
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