Hi, I am working on some gene expression data and am trying to come up with a random walk algorithm to cluster my data.
Here's what I need. I have a probability matrix of several genes against each other. Assuming each one of the genes (columns and rows) on the probability matrix is a node, I am trying to write a script that reads in this matrix and performs one step random walks between these nodes. The edges are weighted by the probabilities in the matrix. I also need it to create another matrix that keeps score of how many times a certain edge gets walked. I am rather new to PERL and have been doing most of my work on S-plus. If any of you are familiar with this type of analysis or if you thik you might be able to help me, given more detail please let me know. Thank you, Kalyan Dudala Kalyan Chakravarthy Dudala Graduate Assistant Ecology, Evolutionary and Organismal Biology Rm 339, Bessey Hall Iowa State University Ames, IA 50011 -- To unsubscribe, e-mail: [EMAIL PROTECTED] For additional commands, e-mail: [EMAIL PROTECTED] <http://learn.perl.org/> <http://learn.perl.org/first-response>
