Sorry if I already missed a post where you said you couldn't (have had the flu), but 
could you use one of the various modules in CPAN to control gnuplot instead of trying 
to manipulate it yourself?

A quick search:
http://search.cpan.org/search?query=Gnuplot&mode=all
http://search.cpan.org/author/CAIDAPERL/Chart-Graph-2.0/Graph/Gnuplot.pm
http://search.cpan.org/author/ILYAZ/Term-Gnuplot-0.5704/Gnuplot.pm

Just a thought.....

http://danconia.org

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