i'm writing a small script to submit information to a 'BLAST' server, which
searches a database for genetic matches to DNA sequences.  the way the
process works is you input a DNA or protein sequence, ask the server to
search and it returns a search id# and an estimated time of completion.
once this time is up, the webpage reloads and usually, the server has
underestimated the time it needed to preform the search so it asks you to
wait again.  once you are done waiting it returns its results.

currently, my script is capable of submitting the sequence using the blast
api, storing the id# and estimated time of completion in two different
variables, and waiting the alotted amount of time.  When the script
resubmits the id# to get the results, the page that is returned is chopped
off before the </html> tag, however, which is bad because directly after it
is a comment which states whether the blast server is still waiting for the
results or if the results are ready.  i need this info to write an if
argument in perl.

so long story short, does lwp not return anything after the </html> tag or
has anyone run into a similar problem? 

thanks 
nate 

  

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