Dear ALL, I have a file that looks like this.
Query=sp|P59287|CASS_RICCO Hit=scaffold293_size341291 Bit=152 Length=349 Percent_id=228.36676217765 Query=sp|P59287|CASS_RICCO Hit=scaffold293_size341291 Bit=152 Length=110 Percent_id=241.818181818182 Query=sp|P59287|CASS_RICCO Hit=scaffold293_size341291 Bit=152 Length=110 Percent_id=240 Query=sp|P59287|CASS_RICCO Hit=scaffold293_size341291 Bit=152 Length=130 Percent_id=233.076923076923 Query=sp|P59287|CASS_RICCO Hit=scaffold293_size341291 Bit=152 Length=105 Percent_id=241.904761904762 Query=sp|P59287|CASS_RICCO Hit=scaffold293_size341291 Bit=152 Length=193 Percent_id=227.461139896373 Query=sp|P59287|CASS_RICCO Hit=scaffold293_size341291 Bit=152 Length=150 Percent_id=222.666666666667 Query=sp|P59287|CASS_RICCO Hit=scaffold4_size6989527 Bit=150 Length=217 Percent_id=235.023041474654 Query=sp|P59287|CASS_RICCO Hit=scaffold4_size6989527 Bit=150 Length=107 Percent_id=247.663551401869 Query=sp|P59287|CASS_RICCO Hit=scaffold4_size6989527 Bit=150 Length=107 Percent_id=247.663551401869 Query=sp|P59287|CASS_RICCO Hit=scaffold4_size6989527 Bit=150 Length=174 Percent_id=224.137931034483 Query=sp|P59287|CASS_RICCO Hit=scaffold4_size6989527 Bit=150 Length=98 Percent_id=236.734693877551 Query=sp|P59287|CASS_RICCO Hit=scaffold4_size6989527 Bit=150 Length=93 Percent_id=237.634408602151 Query=sp|P59287|CASS_RICCO Hit=scaffold4_size6989527 Bit=150 Length=90 Percent_id=237.777777777778 Query=sp|P59287|CASS_RICCO Hit=scaffold4_size6989527 Bit=150 Length=82 Percent_id=231.707317073171 Query=sp|P59287|CASS_RICCO Hit=scaffold4_size6989527 Bit=150 Length=89 Percent_id=230.337078651685 I need hints to write a script that will recognise the fragments of protein in the same scaffolds. Best wishes, Alaba
