i am able to run the following command from the shell (i am working on Mac Snow Leopard):
cgatools evidence2sam --beta --evidence-dnbs evidenceDnbs-chr11-GS000010026-ASM-T1.tsv.bz2 --reference build36.crr --output CGI_10026_CLL046_chr11_NUMA1_N.sam --extract-genomic-region chr11,71391559,71469221 --add-mate-sequence The command i give above executes perfectly and i get the desired results. Problem is that i need to execute variations of this command around two hundred times on the shell. Can i embed this command in a python script (i think one of the functions in the os module might be able to do what i want). Thanks. _______________________________________________ BangPypers mailing list BangPypers@python.org http://mail.python.org/mailman/listinfo/bangpypers
